PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G28710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 156aa    MW: 16730.3 Da    PI: 10.4919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G28710.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00133456123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F++   L  H  +H
  AT2G28710.1 34 FACKTCNKEFPSFQALGGHRASH 56
                 78**********99999998887 PP

2zf-C2H212.20.0005478100123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+Cg  F     L  H+r+H
  AT2G28710.1  78 HECPICGAEFAVGQALGGHMRKH 100
                  79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.38E-832100No hitNo description
PfamPF139126.9E-133358IPR007087Zinc finger, C2H2
SMARTSM003550.233456IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3693461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
PROSITE profilePS501579.82778105IPR007087Zinc finger, C2H2
SMARTSM003550.06378100IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-1078102IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0009005anatomyroot
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009047anatomystem
PO:0020038anatomypetiole
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA  60
ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH RGGSGGGGGR SLAPATAPVT  120
MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100109RGGSGGGGGR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341845420.0
Genevisible263411_at0.0
Expression AtlasAT2G28710-
AtGenExpressAT2G28710-
ATTED-IIAT2G28710-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G28710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G28710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071840.0AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence.
GenBankBT0293300.0BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180439.11e-111C2H2-type zinc finger-containing protein
SwissprotQ424103e-44ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLQ9SI971e-111Q9SI97_ARATH; At2g28710
STRINGAT2G28710.11e-111(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Representative plantOGRP13115149
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Hammond JP, et al.
    Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants.
    Plant Physiol., 2003. 132(2): p. 578-96
    [PMID:12805589]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Hampton CR, et al.
    Cesium toxicity in Arabidopsis.
    Plant Physiol., 2004. 136(3): p. 3824-37
    [PMID:15489280]
  5. Taki N, et al.
    12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis.
    Plant Physiol., 2005. 139(3): p. 1268-83
    [PMID:16258017]
  6. Mittler R, et al.
    Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress.
    FEBS Lett., 2006. 580(28-29): p. 6537-42
    [PMID:17112521]
  7. Wang Z, et al.
    Identification and characterization of COI1-dependent transcription factor genes involved in JA-mediated response to wounding in Arabidopsis plants.
    Plant Cell Rep., 2008. 27(1): p. 125-35
    [PMID:17786451]
  8. Jakoby MJ, et al.
    Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.
    Plant Physiol., 2008. 148(3): p. 1583-602
    [PMID:18805951]